IL_6QDW_038
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UCCCAAAG*CA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QDW_038 not in the Motif Atlas
- Homologous match to IL_5J7L_278
- Geometric discrepancy: 0.0672
- The information below is about IL_5J7L_278
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
6QDW|1|b|U|1006
6QDW|1|b|C|1007
6QDW|1|b|C|1008
6QDW|1|b|C|1009
6QDW|1|b|A|1010
6QDW|1|b|A|1011
6QDW|1|b|A|1012
6QDW|1|b|G|1013
*
6QDW|1|b|C|1152
6QDW|1|b|A|1153
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L13
- Chain q
- 50S ribosomal protein L20
Coloring options: