IL_6QDW_047

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6QDW|1|b|U|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_047 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1327

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6QDW|1|b|C|1210
6QDW|1|b|U|1211
6QDW|1|b|G|1212
6QDW|1|b|U|1213
6QDW|1|b|G|1214
6QDW|1|b|A|1215
6QDW|1|b|A|1216
6QDW|1|b|G|1217
*
6QDW|1|b|U|1236
6QDW|1|b|G|1237
6QDW|1|b|G|1238
6QDW|1|b|A|1239
6QDW|1|b|G|1240

Current chains

Chain b

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L20