IL_6QDW_050

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6QDW|1|b|G|1334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_050 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.0958

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6QDW|1|b|C|1321
6QDW|1|b|C|1322
6QDW|1|b|A|1323
6QDW|1|b|A|1324
6QDW|1|b|C|1325
*
6QDW|1|b|G|1333
6QDW|1|b|G|1334
6QDW|1|b|G|1335

Current chains

Chain b

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L22

Chain t

50S ribosomal protein L23

Chain z

Gamma-crystallin B