IL_6QDW_051
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUAAG*CGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QDW_051 not in the Motif Atlas
- Homologous match to IL_5J7L_292
- Geometric discrepancy: 0.0681
- The information below is about IL_5J7L_292
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- UAA/GAN
- Motif group
- IL_89021.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6QDW|1|b|C|1353
6QDW|1|b|U|1354
6QDW|1|b|A|1355
6QDW|1|b|A|1356
6QDW|1|b|G|1357
*
6QDW|1|b|C|1378
6QDW|1|b|G|1379
6QDW|1|b|A|1380
6QDW|1|b|U|1381
6QDW|1|b|G|1382
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L2
Coloring options: