IL_6QDW_057

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

6QDW|1|b|U|1556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_057 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1751

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6QDW|1|b|C|1439
6QDW|1|b|U|1440
6QDW|1|b|A|1441
6QDW|1|b|U|1442
*
6QDW|1|b|A|1553
6QDW|1|b|A|1554
6QDW|1|b|A|1555
6QDW|1|b|U|1556
6QDW|1|b|G|1557

Current chains

Chain b

23S rRNA

Nearby chains