IL_6QDW_100
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QDW_100 not in the Motif Atlas
- Geometric match to IL_5J7L_346
- Geometric discrepancy: 0.082
- The information below is about IL_5J7L_346
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6QDW|1|b|C|2656
6QDW|1|b|U|2657
6QDW|1|b|A|2658
6QDW|1|b|G|2659
6QDW|1|b|U|2660
6QDW|1|b|A|2661
6QDW|1|b|C|2662
*
6QDW|1|b|G|2667
6QDW|1|b|G|2668
6QDW|1|b|A|2669
6QDW|1|b|C|2670
6QDW|1|b|C|2671
6QDW|1|b|G|2672
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain g
- 50S ribosomal protein L6
Coloring options: