IL_6QDW_114

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_114 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0958

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6QDW|1|b|U|1853
6QDW|1|b|U|1854
6QDW|1|b|A|1855
6QDW|1|b|A|1856
6QDW|1|b|U|1857
6QDW|1|b|U|1858
6QDW|1|b|G|1859
6QDW|1|b|A|1860
6QDW|1|b|U|1861
6QDW|1|b|G|1862
*
6QDW|1|b|U|1886
6QDW|1|b|U|1887
6QDW|1|b|G|1888
6QDW|1|b|A|1889
6QDW|1|b|U|1890
6QDW|1|b|C|1891
6QDW|1|b|G|1892
6QDW|1|b|A|1893
6QDW|1|b|A|1894
6QDW|1|b|G|1895

Current chains

Chain b

23S rRNA

Nearby chains