IL_6QIK_019

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

6QIK|1|A|U|534, 6QIK|1|A|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_019 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1211

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6QIK|1|A|G|531
6QIK|1|A|A|532
6QIK|1|A|A|533
6QIK|1|A|U|534
6QIK|1|A|G|535
6QIK|1|A|U|536
6QIK|1|A|A|537
6QIK|1|A|G|538
*
6QIK|1|A|U|553
6QIK|1|A|A|554
6QIK|1|A|U|555
6QIK|1|A|U|556
6QIK|1|A|A|557
6QIK|1|A|U|558
6QIK|1|A|A|559
6QIK|1|A|G|560
6QIK|1|A|C|561

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14-A

Chain S

60S ribosomal protein L20-A