3D structure

PDB id
6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAAU*AGGAA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QIK_063 not in the Motif Atlas
Homologous match to IL_8C3A_073
Geometric discrepancy: 0.1123
The information below is about IL_8C3A_073
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_95716.2
Basepair signature
cWW-cWW-tHS-tHS-tSH-cWW
Number of instances in this motif group
18

Unit IDs

6QIK|1|A|U|1645
6QIK|1|A|G|1646
6QIK|1|A|A|1647
6QIK|1|A|A|1648
6QIK|1|A|U|1649
*
6QIK|1|A|A|1806
6QIK|1|A|G|1807
6QIK|1|A|G|1808
6QIK|1|A|A|1809
6QIK|1|A|A|1810

Current chains

Chain A
25S ribosomal RNA

Nearby chains

Chain B
60S ribosomal protein L2-A
Chain Y
60S ribosomal protein L27-A
Chain g
60S ribosomal protein L34-A

Coloring options:


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