IL_6QIK_063

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_063 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1123

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6QIK|1|A|U|1645
6QIK|1|A|G|1646
6QIK|1|A|A|1647
6QIK|1|A|A|1648
6QIK|1|A|U|1649
*
6QIK|1|A|A|1806
6QIK|1|A|G|1807
6QIK|1|A|G|1808
6QIK|1|A|A|1809
6QIK|1|A|A|1810

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L2-A

Chain Y

60S ribosomal protein L27-A

Chain g

60S ribosomal protein L34-A