3D structure

PDB id
6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAAUU*ACCA
Length
9 nucleotides
Bulged bases
6QIK|1|A|C|3092
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QIK_115 not in the Motif Atlas
Homologous match to IL_8C3A_126
Geometric discrepancy: 0.1149
The information below is about IL_8C3A_126
Detailed Annotation
Major groove minor groove platform with tHH
Broad Annotation
Major groove minor groove platform with tHH
Motif group
IL_14592.1
Basepair signature
cWW-tHH-cWW-L-L
Number of instances in this motif group
4

Unit IDs

6QIK|1|A|U|3047
6QIK|1|A|A|3048
6QIK|1|A|A|3049
6QIK|1|A|U|3050
6QIK|1|A|U|3051
*
6QIK|1|A|A|3091
6QIK|1|A|C|3092
6QIK|1|A|C|3093
6QIK|1|A|A|3094

Current chains

Chain A
25S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L3
Chain L
60S ribosomal protein L23-A
Chain v
60S ribosomal protein L24-A

Coloring options:


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