IL_8C3A_126

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

8C3A|1|1|C|3064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

Major groove minor groove platform with tHH

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8C3A|1|1|U|3019
8C3A|1|1|A|3020
8C3A|1|1|A|3021
8C3A|1|1|U|3022
8C3A|1|1|U|3023
*
8C3A|1|1|A|3063
8C3A|1|1|C|3064
8C3A|1|1|C|3065
8C3A|1|1|A|3066

Current chains

Chain 1

25S

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain 7

60S ribosomal protein L24-A

Chain k

60S ribosomal protein L3