IL_6QIK_127

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

6QIK|1|A|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_127 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.0941

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6QIK|1|A|G|3328
6QIK|1|A|U|3329
6QIK|1|A|A|3330
*
6QIK|1|A|U|3373
6QIK|1|A|U|3374
6QIK|1|A|A|3375
6QIK|1|A|A|3376
6QIK|1|A|G|3377
6QIK|1|A|C|3378

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A