IL_6QIK_146

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6QIK|1|A|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_146 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.5507

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6QIK|1|A|G|1234
6QIK|1|A|U|1235
6QIK|1|A|G|1236
6QIK|1|A|G|1237
6QIK|1|A|C|1238
*
6QIK|1|A|G|1250
6QIK|1|A|A|1251
6QIK|1|A|A|1252
6QIK|1|A|U|1253
6QIK|1|A|C|1254

Current chains

Chain A

25S ribosomal RNA

Nearby chains