3D structure

PDB id
6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UCAAC*GGA
Length
8 nucleotides
Bulged bases
6QIK|1|A|G|1514
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QIK_147 not in the Motif Atlas
Homologous match to IL_8C3A_482
Geometric discrepancy: 0.1283
The information below is about IL_8C3A_482
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_04395.1
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
3

Unit IDs

6QIK|1|A|U|1501
6QIK|1|A|C|1502
6QIK|1|A|A|1503
6QIK|1|A|A|1504
6QIK|1|A|C|1505
*
6QIK|1|A|G|1513
6QIK|1|A|G|1514
6QIK|1|A|A|1515

Current chains

Chain A
25S ribosomal RNA

Nearby chains

Chain R
60S ribosomal protein L19-A
Chain U
60S ribosomal protein L17-A
Chain k
60S ribosomal protein L39
Chain z
Cytoplasmic 60S subunit biogenesis factor REH1

Coloring options:


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