IL_6QIK_147
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCAAC*GGA
- Length
- 8 nucleotides
- Bulged bases
- 6QIK|1|A|G|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QIK_147 not in the Motif Atlas
- Homologous match to IL_8C3A_482
- Geometric discrepancy: 0.1283
- The information below is about IL_8C3A_482
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_04395.1
- Basepair signature
- cWW-cWS-tWH-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6QIK|1|A|U|1501
6QIK|1|A|C|1502
6QIK|1|A|A|1503
6QIK|1|A|A|1504
6QIK|1|A|C|1505
*
6QIK|1|A|G|1513
6QIK|1|A|G|1514
6QIK|1|A|A|1515
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain U
- 60S ribosomal protein L17-A
- Chain k
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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