IL_6QIK_152
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QIK_152 not in the Motif Atlas
- Geometric match to IL_5TBW_475
- Geometric discrepancy: 0.1471
- The information below is about IL_5TBW_475
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28976.1
- Basepair signature
- cWW-L-cWW-cSH-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6QIK|1|A|C|2889
6QIK|1|A|A|2890
6QIK|1|A|U|2891
6QIK|1|A|A|2892
*
6QIK|1|A|U|2909
6QIK|1|A|A|2910
6QIK|1|A|A|2911
6QIK|1|A|G|2912
6QIK|1|A|C|2913
6QIK|1|A|G|2914
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L3
- Chain F
- 60S ribosomal protein L9-A
- Chain J
- 60S ribosomal protein L16-B
- Chain L
- 60S ribosomal protein L23-A
- Chain t
- Ubiquitin-60S ribosomal protein L40
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