IL_6QNQ_193

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6QNQ|1|1G|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_193 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1208

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6QNQ|1|1G|G|662
6QNQ|1|1G|A|663
6QNQ|1|1G|G|664
6QNQ|1|1G|A|665
6QNQ|1|1G|G|666
*
6QNQ|1|1G|U|740
6QNQ|1|1G|G|741
6QNQ|1|1G|G|742
6QNQ|1|1G|U|743

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 52

30S ribosomal protein S6

Chain 6A

30S ribosomal protein S15

Chain 9A

30S ribosomal protein S18