IL_6QNQ_399
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QNQ_399 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.1287
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6QNQ|1|1J|C|71
6QNQ|1|1J|G|72
6QNQ|1|1J|A|73
6QNQ|1|1J|U|74
6QNQ|1|1J|G|75
6QNQ|1|1J|G|76
6QNQ|1|1J|U|77
6QNQ|1|1J|A|78
6QNQ|1|1J|C|79
*
6QNQ|1|1J|G|97
6QNQ|1|1J|G|98
6QNQ|1|1J|A|99
6QNQ|1|1J|G|100
6QNQ|1|1J|A|101
6QNQ|1|1J|G|102
6QNQ|1|1J|U|103
6QNQ|1|1J|A|104
6QNQ|1|1J|G|105
Current chains
- Chain 1J
- 5S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 45
- 50S ribosomal protein L16
- Chain D5
- 50S ribosomal protein L25
Coloring options: