3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CGAUGGUAC*GGAGAGUAG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QNQ_399 not in the Motif Atlas
Homologous match to IL_7A0S_106
Geometric discrepancy: 0.1287
The information below is about IL_7A0S_106
Detailed Annotation
Bacterial 5S Loop E
Broad Annotation
Loop E
Motif group
IL_56455.6
Basepair signature
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

6QNQ|1|1J|C|71
6QNQ|1|1J|G|72
6QNQ|1|1J|A|73
6QNQ|1|1J|U|74
6QNQ|1|1J|G|75
6QNQ|1|1J|G|76
6QNQ|1|1J|U|77
6QNQ|1|1J|A|78
6QNQ|1|1J|C|79
*
6QNQ|1|1J|G|97
6QNQ|1|1J|G|98
6QNQ|1|1J|A|99
6QNQ|1|1J|G|100
6QNQ|1|1J|A|101
6QNQ|1|1J|G|102
6QNQ|1|1J|U|103
6QNQ|1|1J|A|104
6QNQ|1|1J|G|105

Current chains

Chain 1J
5S ribosomal RNA

Nearby chains

Chain 14
Large subunit ribosomal RNA; LSU rRNA
Chain 45
50S ribosomal protein L16
Chain D5
50S ribosomal protein L25

Coloring options:


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