IL_6QNR_009

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACAAC*GCUAAUCC

Length

15 nucleotides

Bulged bases

6QNR|1|13|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_009 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2956

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6QNR|1|13|G|147
6QNR|1|13|G|148
6QNR|1|13|A|149
6QNR|1|13|C|150
6QNR|1|13|A|151
6QNR|1|13|A|152
6QNR|1|13|C|153
*
6QNR|1|13|G|168
6QNR|1|13|C|169
6QNR|1|13|U|170
6QNR|1|13|A|171
6QNR|1|13|A|172
6QNR|1|13|U|173
6QNR|1|13|C|174
6QNR|1|13|C|175

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S20