IL_6QNR_159

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6QNR|1|14|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_159 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1034

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6QNR|1|14|U|2636
6QNR|1|14|U|2637
6QNR|1|14|G|2638
6QNR|1|14|A|2639
6QNR|1|14|G|2640
*
6QNR|1|14|C|2774
6QNR|1|14|A|2775
6QNR|1|14|A|2776
6QNR|1|14|G|2777
6QNR|1|14|A|2778
6QNR|1|14|U|2779
6QNR|1|14|G|2780
6QNR|1|14|A|2781
6QNR|1|14|G|2782

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 29

50S ribosomal protein L3