IL_6QNR_214

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_214 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1985

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6QNR|1|1G|G|1050
6QNR|1|1G|C|1051
6QNR|1|1G|U|1052
*
6QNR|1|1G|G|1206
6QNR|1|1G|2MG|1207
6QNR|1|1G|C|1208

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 22

30S ribosomal protein S3

Chain 5A

30S ribosomal protein S14 type Z