IL_6QNR_245

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

6QNR|1|1H|U|530, 6QNR|1|1H|G|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_245 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0571

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

6QNR|1|1H|G|508
6QNR|1|1H|A|509
6QNR|1|1H|A|510
6QNR|1|1H|C|511
*
6QNR|1|1H|G|522
6QNR|1|1H|A|523
6QNR|1|1H|G|524
6QNR|1|1H|U|525
6QNR|1|1H|G|526
6QNR|1|1H|A|527
6QNR|1|1H|A|528
6QNR|1|1H|A|529
6QNR|1|1H|U|530
6QNR|1|1H|A|531
6QNR|1|1H|G|532
6QNR|1|1H|A|533
6QNR|1|1H|G|534
6QNR|1|1H|C|535

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain E8

50S ribosomal protein L22

Chain G8

50S ribosomal protein L24