IL_6QNR_334

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_334 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1432

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6QNR|1|1H|G|2751
6QNR|1|1H|A|2752
6QNR|1|1H|U|2753
6QNR|1|1H|A|2754
6QNR|1|1H|A|2755
6QNR|1|1H|C|2756
*
6QNR|1|1H|G|2776
6QNR|1|1H|G|2777
6QNR|1|1H|A|2778
6QNR|1|1H|A|2779
6QNR|1|1H|G|2780
6QNR|1|1H|C|2781

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13