IL_6QNR_363

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6QNR|1|14|C|2111, 6QNR|1|14|G|2112, 6QNR|1|14|U|2113, 6QNR|1|14|U|2118, 6QNR|1|14|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_363 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2741

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6QNR|1|14|G|2110
6QNR|1|14|C|2111
6QNR|1|14|G|2112
6QNR|1|14|U|2113
6QNR|1|14|A|2114
6QNR|1|14|G|2115
6QNR|1|14|G|2116
6QNR|1|14|A|2117
6QNR|1|14|U|2118
6QNR|1|14|A|2119
6QNR|1|14|G|2120
*
6QNR|1|14|C|2178
6QNR|1|14|C|2179

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA

Chain 79

50S ribosomal protein L1