IL_6QNR_390

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUCA*UUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_390 not in the Motif Atlas

Geometric match to IL_4UYK_003

Geometric discrepancy: 0.1903

The information below is about IL_4UYK_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6QNR|1|13|A|1531
6QNR|1|13|U|1532
6QNR|1|13|C|1533
6QNR|1|13|A|1534
*
6QNR|1|4K|U|38
6QNR|1|4K|U|39
6QNR|1|4K|U|40
6QNR|1|4K|U|41

Current chains

Chain 13

16S ribosomal RNA

Chain 4K

mRNA

Nearby chains

Chain 2I

30S ribosomal protein S11