IL_6QT0_082

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QT0_082 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.131

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6QT0|1|A|U|2211
6QT0|1|A|C|2212
6QT0|1|A|A|2213
6QT0|1|A|A|2214
6QT0|1|A|A|2215
6QT0|1|A|G|2216
6QT0|1|A|U|2217
*
6QT0|1|A|A|2228
6QT0|1|A|A|2229
6QT0|1|A|C|2230
6QT0|1|A|C|2231
6QT0|1|A|A|2232
6QT0|1|A|A|2233
6QT0|1|A|G|2234

Current chains

Chain A

25S rRNA

Nearby chains

Chain h

60S ribosomal protein L36-A