IL_6QT0_084

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6QT0|1|A|A|2281, 6QT0|1|A|C|2287, 6QT0|1|A|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QT0_084 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.092

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6QT0|1|A|C|2277
6QT0|1|A|C|2278
6QT0|1|A|A|2279
6QT0|1|A|A|2280
6QT0|1|A|A|2281
6QT0|1|A|U|2282
6QT0|1|A|G|2283
6QT0|1|A|C|2284
6QT0|1|A|C|2285
6QT0|1|A|U|2286
6QT0|1|A|C|2287
6QT0|1|A|G|2288
*
6QT0|1|A|C|2304
6QT0|1|A|G|2305
6QT0|1|A|C|2306
6QT0|1|A|G|2307

Current chains

Chain A

25S rRNA

Nearby chains