IL_6QTZ_039
3D structure
- PDB id
- 6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 6QTZ|1|A|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QTZ_039 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.1353
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
6QTZ|1|A|G|999
6QTZ|1|A|C|1000
6QTZ|1|A|G|1001
6QTZ|1|A|A|1002
6QTZ|1|A|A|1003
6QTZ|1|A|U|1004
*
6QTZ|1|A|A|1046
6QTZ|1|A|A|1047
6QTZ|1|A|A|1048
6QTZ|1|A|C|1049
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain P
- 60S ribosomal protein L5
- Chain T
- 60S ribosomal protein L21-A
- Chain q
- 60S ribosomal protein L10
- Chain x
- 5S ribosomal RNA; 5S rRNA
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