3D structure

PDB id
6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUAAG*CGAAAG
Length
11 nucleotides
Bulged bases
6QTZ|1|A|A|1588, 6QTZ|1|A|A|1589
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QTZ_061 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.1112
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

6QTZ|1|A|C|1532
6QTZ|1|A|U|1533
6QTZ|1|A|A|1534
6QTZ|1|A|A|1535
6QTZ|1|A|G|1536
*
6QTZ|1|A|C|1585
6QTZ|1|A|G|1586
6QTZ|1|A|A|1587
6QTZ|1|A|A|1588
6QTZ|1|A|A|1589
6QTZ|1|A|G|1590

Current chains

Chain A
25S rRNA

Nearby chains

Chain B
60S ribosomal protein L2-A
Chain g
60S ribosomal protein L34-A
Chain i
60S ribosomal protein L37-A
Chain k
60S ribosomal protein L39
Chain y
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:


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