IL_6QTZ_065

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

6QTZ|1|A|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QTZ_065 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.3638

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6QTZ|1|A|U|1627
6QTZ|1|A|C|1628
6QTZ|1|A|U|1629
6QTZ|1|A|U|1630
6QTZ|1|A|C|1631
*
6QTZ|1|A|G|1811
6QTZ|1|A|G|1812
6QTZ|1|A|A|1813
6QTZ|1|A|A|1814
6QTZ|1|A|U|1815
6QTZ|1|A|A|1816

Current chains

Chain A

25S rRNA

Nearby chains

Chain Y

60S ribosomal protein L27-A