IL_6QTZ_077
3D structure
- PDB id
- 6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 6QTZ|1|A|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QTZ_077 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1242
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6QTZ|1|A|C|1918
6QTZ|1|A|G|1919
6QTZ|1|A|U|1920
6QTZ|1|A|A|1921
6QTZ|1|A|A|1922
6QTZ|1|A|C|1923
*
6QTZ|1|A|G|1928
6QTZ|1|A|G|1929
6QTZ|1|A|A|1930
6QTZ|1|A|U|1931
6QTZ|1|A|A|1932
6QTZ|1|A|A|1933
6QTZ|1|A|G|1934
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain m
- 60S ribosomal protein L43-A
- Chain o
- Large subunit GTPase 1
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