IL_6QTZ_086
3D structure
- PDB id
- 6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QTZ_086 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1228
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6QTZ|1|A|U|2211
6QTZ|1|A|C|2212
6QTZ|1|A|A|2213
6QTZ|1|A|A|2214
6QTZ|1|A|A|2215
6QTZ|1|A|G|2216
6QTZ|1|A|U|2217
*
6QTZ|1|A|A|2228
6QTZ|1|A|A|2229
6QTZ|1|A|C|2230
6QTZ|1|A|C|2231
6QTZ|1|A|A|2232
6QTZ|1|A|A|2233
6QTZ|1|A|G|2234
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain h
- 60S ribosomal protein L36-A
- Chain l
- 60S ribosomal protein L42-A
- Chain w
- 60S ribosomal export protein NMD3
Coloring options: