IL_6QTZ_133

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QTZ_133 not in the Motif Atlas

Geometric match to IL_6CZR_169

Geometric discrepancy: 0.3399

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

6QTZ|1|A|A|3342
6QTZ|1|A|G|3343
6QTZ|1|A|A|3344
6QTZ|1|A|G|3345
*
6QTZ|1|A|C|3360
6QTZ|1|A|G|3361
6QTZ|1|A|A|3362
6QTZ|1|A|U|3363

Current chains

Chain A

25S rRNA

Nearby chains