IL_6QTZ_139

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUCCC*GAUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QTZ_139 not in the Motif Atlas

Geometric match to IL_4V9F_104

Geometric discrepancy: 0.1796

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.12

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

12

Unit IDs

6QTZ|1|x|U|32
6QTZ|1|x|U|33
6QTZ|1|x|C|34
6QTZ|1|x|C|35
6QTZ|1|x|C|36
*
6QTZ|1|x|G|41
6QTZ|1|x|A|42
6QTZ|1|x|U|43
6QTZ|1|x|C|44
6QTZ|1|x|A|45

Current chains

Chain x

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain E

60S ribosomal protein L11-A

Chain P

60S ribosomal protein L5