IL_6QUL_096

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6QUL|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QUL_096 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1073

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6QUL|1|A|C|2636
6QUL|1|A|U|2637
6QUL|1|A|G|2638
6QUL|1|A|A|2639
6QUL|1|A|G|2640
*
6QUL|1|A|C|2774
6QUL|1|A|G|2775
6QUL|1|A|A|2776
6QUL|1|A|G|2777
6QUL|1|A|A|2778
6QUL|1|A|U|2779
6QUL|1|A|G|2780
6QUL|1|A|A|2781
6QUL|1|A|G|2782

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13