IL_6QZP_089
3D structure
- PDB id
- 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 6QZP|1|L5|U|2661, 6QZP|1|L5|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QZP_089 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1389
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6QZP|1|L5|U|2656
6QZP|1|L5|G|2657
6QZP|1|L5|G|2658
6QZP|1|L5|A|2659
6QZP|1|L5|A|2660
6QZP|1|L5|U|2661
6QZP|1|L5|G|2662
*
6QZP|1|L5|C|2672
6QZP|1|L5|G|2673
6QZP|1|L5|A|2674
6QZP|1|L5|G|2675
6QZP|1|L5|A|2676
6QZP|1|L5|G|2677
6QZP|1|L5|A|2678
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
- Chain SN
- 40S ribosomal protein S13
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