IL_6QZP_138
3D structure
- PDB id
- 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGUA(PSU)(OMG)U*GCGAAG
- Length
- 13 nucleotides
- Bulged bases
- 6QZP|1|L5|U|4634
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QZP_138 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.3986
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6QZP|1|L5|U|4632
6QZP|1|L5|G|4633
6QZP|1|L5|U|4634
6QZP|1|L5|A|4635
6QZP|1|L5|PSU|4636
6QZP|1|L5|OMG|4637
6QZP|1|L5|U|4638
*
6QZP|1|L5|G|4661
6QZP|1|L5|C|4662
6QZP|1|L5|G|4663
6QZP|1|L5|A|4664
6QZP|1|L5|A|4665
6QZP|1|L5|G|4666
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LW
- 60S ribosomal protein L24
- Chain Ld
- 60S ribosomal protein L31
Coloring options: