IL_6QZP_171
3D structure
- PDB id
- 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UACGCAC*GUGAAA
- Length
- 13 nucleotides
- Bulged bases
- 6QZP|1|S2|C|65
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QZP_171 not in the Motif Atlas
- Geometric match to IL_2NPY_001
- Geometric discrepancy: 0.3262
- The information below is about IL_2NPY_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80926.1
- Basepair signature
- cWW-cWW-tSH-tHS-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6QZP|1|S2|U|63
6QZP|1|S2|A|64
6QZP|1|S2|C|65
6QZP|1|S2|G|66
6QZP|1|S2|C|67
6QZP|1|S2|A|68
6QZP|1|S2|C|69
*
6QZP|1|S2|G|80
6QZP|1|S2|U|81
6QZP|1|S2|G|82
6QZP|1|S2|A|83
6QZP|1|S2|A|84
6QZP|1|S2|A|85
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
- Chain SY
- 40S ribosomal protein S24
Coloring options: