IL_6QZP_181

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6QZP|1|S2|U|305, 6QZP|1|S2|G|307

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_181 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3964

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6QZP|1|S2|C|216
6QZP|1|S2|A|217
6QZP|1|S2|U|218
6QZP|1|S2|U|219
*
6QZP|1|S2|A|302
6QZP|1|S2|C|303
6QZP|1|S2|C|304
6QZP|1|S2|U|305
6QZP|1|S2|C|306
6QZP|1|S2|G|307
6QZP|1|S2|G|308
6QZP|1|S2|G|309

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8