IL_6QZP_270

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_270 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0995

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6QZP|1|L5|G|2358
6QZP|1|L5|U|2359
6QZP|1|L5|A|2360
6QZP|1|L5|G|2361
6QZP|1|L5|U|2362
6QZP|1|L5|A2M|2363
6QZP|1|L5|OMG|2364
*
6QZP|1|L5|C|3858
6QZP|1|L5|G|3859
6QZP|1|L5|A|3860
6QZP|1|L5|A|3861
6QZP|1|L5|A|3862
6QZP|1|L5|C|3863

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17