IL_6QZP_279

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

6QZP|1|L5|U|4634, 6QZP|1|L5|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_279 not in the Motif Atlas

Homologous match to IL_8P9A_346

Geometric discrepancy: 0.4373

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98200.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

6QZP|1|L5|U|4632
6QZP|1|L5|G|4633
6QZP|1|L5|U|4634
6QZP|1|L5|A|4635
6QZP|1|L5|PSU|4636
6QZP|1|L5|OMG|4637
*
6QZP|1|L5|C|4662
6QZP|1|L5|G|4663
6QZP|1|L5|A|4664
6QZP|1|L5|A|4665
6QZP|1|L5|G|4666

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31