IL_6R5Q_159

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

6R5Q|1|5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_159 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1931

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6R5Q|1|5|G|5000
6R5Q|1|5|U|5001
6R5Q|1|5|U|5002
*
6R5Q|1|5|G|5045
6R5Q|1|5|U|5046
6R5Q|1|5|C|5047
6R5Q|1|5|A|5048
6R5Q|1|5|G|5049
6R5Q|1|5|C|5050

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain d

eL31