IL_6R5Q_186

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6R5Q|1|K|U|305, 6R5Q|1|K|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_186 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3636

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6R5Q|1|K|C|216
6R5Q|1|K|A|217
6R5Q|1|K|U|218
6R5Q|1|K|U|219
*
6R5Q|1|K|A|302
6R5Q|1|K|C|303
6R5Q|1|K|C|304
6R5Q|1|K|U|305
6R5Q|1|K|C|306
6R5Q|1|K|G|307
6R5Q|1|K|G|308
6R5Q|1|K|G|309

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain x

40S ribosomal protein S4