IL_6R5Q_248
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 6R5Q|1|K|C|1553, 6R5Q|1|K|A|1580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R5Q_248 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.2624
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6R5Q|1|K|G|1550
6R5Q|1|K|U|1551
6R5Q|1|K|G|1552
6R5Q|1|K|C|1553
6R5Q|1|K|C|1554
6R5Q|1|K|U|1555
6R5Q|1|K|A|1556
6R5Q|1|K|C|1557
6R5Q|1|K|C|1558
*
6R5Q|1|K|G|1577
6R5Q|1|K|U|1578
6R5Q|1|K|A|1579
6R5Q|1|K|A|1580
6R5Q|1|K|C|1581
6R5Q|1|K|C|1582
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain 9
- uS14
- Chain GG
- uS10
- Chain SS
- eS10
- Chain UU
- Ribosomal protein S16
- Chain w
- Ribosomal protein S3
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