IL_6R5Q_283
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6R5Q|1|K|C|1331, 6R5Q|1|K|U|1494, 6R5Q|1|K|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R5Q_283 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1077
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6R5Q|1|K|U|1329
6R5Q|1|K|G|1330
6R5Q|1|K|C|1331
6R5Q|1|K|A|1332
6R5Q|1|K|U|1333
6R5Q|1|K|G|1334
6R5Q|1|K|G|1335
*
6R5Q|1|K|U|1492
6R5Q|1|K|C|1493
6R5Q|1|K|U|1494
6R5Q|1|K|G|1495
6R5Q|1|K|U|1496
6R5Q|1|K|G|1497
6R5Q|1|K|A|1498
6R5Q|1|K|U|1499
6R5Q|1|K|G|1500
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain 9
- uS14
- Chain GG
- uS10
- Chain SS
- eS10
- Chain w
- Ribosomal protein S3
Coloring options: