IL_6R6G_078
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 6R6G|1|5|U|1467, 6R6G|1|5|C|1468, 6R6G|1|5|G|1592, 6R6G|1|5|A|1594
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_078 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.2066
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6R6G|1|5|C|1463
6R6G|1|5|U|1464
6R6G|1|5|C|1465
6R6G|1|5|A|1466
6R6G|1|5|U|1467
6R6G|1|5|C|1468
6R6G|1|5|A|1469
6R6G|1|5|G|1470
*
6R6G|1|5|C|1590
6R6G|1|5|U|1591
6R6G|1|5|G|1592
6R6G|1|5|G|1593
6R6G|1|5|A|1594
6R6G|1|5|G|1595
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain H
- uL6
- Chain M
- Ribosomal protein L14
- Chain O
- 60S ribosomal protein L13a
- Chain S
- eL20
- Chain m
- 60S ribosomal protein L40
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