3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UAUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
6R6G|1|5|A|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_081 not in the Motif Atlas
Homologous match to IL_8C3A_057
Geometric discrepancy: 0.2615
The information below is about IL_8C3A_057
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6R6G|1|5|U|1494
6R6G|1|5|A|1495
6R6G|1|5|U|1496
6R6G|1|5|A|1497
6R6G|1|5|G|1498
6R6G|1|5|A|1499
6R6G|1|5|C|1500
6R6G|1|5|A|1501
6R6G|1|5|G|1502
*
6R6G|1|5|C|1559
6R6G|1|5|C|1560
6R6G|1|5|G|1561
6R6G|1|5|A|1562
6R6G|1|5|A|1563

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain m
60S ribosomal protein L40
Chain s
60S acidic ribosomal protein P0

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2178 s