IL_6R6G_081
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 6R6G|1|5|A|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_081 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.2615
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6R6G|1|5|U|1494
6R6G|1|5|A|1495
6R6G|1|5|U|1496
6R6G|1|5|A|1497
6R6G|1|5|G|1498
6R6G|1|5|A|1499
6R6G|1|5|C|1500
6R6G|1|5|A|1501
6R6G|1|5|G|1502
*
6R6G|1|5|C|1559
6R6G|1|5|C|1560
6R6G|1|5|G|1561
6R6G|1|5|A|1562
6R6G|1|5|A|1563
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain m
- 60S ribosomal protein L40
- Chain s
- 60S acidic ribosomal protein P0
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