IL_6R6G_088
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_088 not in the Motif Atlas
- Homologous match to IL_8C3A_065
- Geometric discrepancy: 0.1079
- The information below is about IL_8C3A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6R6G|1|5|G|1751
6R6G|1|5|U|1752
6R6G|1|5|A|1753
6R6G|1|5|G|1754
6R6G|1|5|U|1755
6R6G|1|5|A|1756
6R6G|1|5|G|1757
*
6R6G|1|5|C|2556
6R6G|1|5|G|2557
6R6G|1|5|A|2558
6R6G|1|5|A|2559
6R6G|1|5|A|2560
6R6G|1|5|C|2561
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 1
- X-box-binding protein 1
- Chain C
- uL4
- Chain P
- uL22
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