IL_6R6G_099
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 6R6G|1|5|U|2054, 6R6G|1|5|A|2067
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_099 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1863
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6R6G|1|5|U|2049
6R6G|1|5|G|2050
6R6G|1|5|G|2051
6R6G|1|5|A|2052
6R6G|1|5|A|2053
6R6G|1|5|U|2054
6R6G|1|5|G|2055
*
6R6G|1|5|C|2065
6R6G|1|5|G|2066
6R6G|1|5|A|2067
6R6G|1|5|G|2068
6R6G|1|5|A|2069
6R6G|1|5|G|2070
6R6G|1|5|A|2071
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain QQ
- ribosomal protein uS15
- Chain R
- 60S ribosomal protein L19
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- ribosomal protein eL43
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