IL_6R6G_109
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 6R6G|1|5|A|2361, 6R6G|1|5|U|2377, 6R6G|1|5|C|2381
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_109 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.1095
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6R6G|1|5|C|2358
6R6G|1|5|G|2359
6R6G|1|5|A|2360
6R6G|1|5|A|2361
6R6G|1|5|G|2362
6R6G|1|5|G|2363
*
6R6G|1|5|U|2375
6R6G|1|5|G|2376
6R6G|1|5|U|2377
6R6G|1|5|U|2378
6R6G|1|5|G|2379
6R6G|1|5|A|2380
6R6G|1|5|C|2381
6R6G|1|5|G|2382
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
- Chain p
- ribosomal protein eL43
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