3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAAGG*UGUUGACG
Length
14 nucleotides
Bulged bases
6R6G|1|5|A|2361, 6R6G|1|5|U|2377, 6R6G|1|5|C|2381
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_109 not in the Motif Atlas
Homologous match to IL_8C3A_088
Geometric discrepancy: 0.1095
The information below is about IL_8C3A_088
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_64509.1
Basepair signature
cWW-tWW-tWW-tSS-L-cWW
Number of instances in this motif group
2

Unit IDs

6R6G|1|5|C|2358
6R6G|1|5|G|2359
6R6G|1|5|A|2360
6R6G|1|5|A|2361
6R6G|1|5|G|2362
6R6G|1|5|G|2363
*
6R6G|1|5|U|2375
6R6G|1|5|G|2376
6R6G|1|5|U|2377
6R6G|1|5|U|2378
6R6G|1|5|G|2379
6R6G|1|5|A|2380
6R6G|1|5|C|2381
6R6G|1|5|G|2382

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain A
uL2
Chain K
Small subunit ribosomal RNA; SSU rRNA
Chain p
ribosomal protein eL43

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