IL_6R6G_143

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6R6G|1|5|C|3290

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_143 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.215

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6R6G|1|5|C|3152
6R6G|1|5|C|3153
6R6G|1|5|A|3154
6R6G|1|5|U|3155
*
6R6G|1|5|A|3287
6R6G|1|5|G|3288
6R6G|1|5|G|3289
6R6G|1|5|C|3290
6R6G|1|5|G|3291

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

60S ribosomal protein L13a